Division of Immunology and Genetics

Cancer and Vascular Biology Group - Cellular Laboratory | Molecular Mechanisms Laboratory | Matrix Biology Laboratory
Medical Genome Centre - Australian Cancer Research Foundation Genetics Laboratory | Goodnow Laboratory
Immunity and Immunopathology in Infectious Disease | Viral Immunology Group | Immunopathology Research Group | Human Genetics Group |
Vaccine Immunology Group - Immune Regulation and Vaccine Development Laboratory | Synthetic Vaccines Laboratory | Initiators and Regulators of Immunity Laboratory
Infection and Immunity Group | Diabetes/Transplantation Immunobiology Laboratory | Cancer and Human Immunology Group



The Division of Immunology and Genetics is comprised of a number of research groups and laboratories that pursue fundamental research into cellular, molecular and genetic processes of relevance to medicine. Common medical problems investigated by members of the Division include infectious diseases, cancer, diabetes, autoimmune disease and mental illness, with a major interest being the immune system.

Professor Chris Parish

Professor Chris Parish,  Photo: JCSMR Multimedia Unit

Specific research undertaken by the Division includes investigations of viral replication, analyses of the immune response to viral infections, development of HIV and cancer vaccines, molecular and physiological analysis of autoimmunity and its contribution to the pathogenesis of diseases such as diabetes and multiple sclerosis, and research on the processes of inflammation, blood vessel growth and spread of tumours.

Several of the groups with overlapping interests have formed collaborative research programs that focus on specific areas and generate synergies that could not be achieved independently. For example, the Integrative Genetics Program pools the expertise of several groups in order to address fundamental questions regarding the biological and clinical significance of genetic diversity. These studies have implications for the understanding of the genotype/ environmental interactions that appear to have a role in many disorders such as common forms of mental illness that are characterized by anxiety and depression, Parkinson's disease and different forms of cancer.

The research carried out within the Division and its associated programs has been enhanced by the establishment of the Medical Genome Centre. The mutant mice generated in the Centre will provide a range of animal models for the detailed study of the many biological processes under investigation within the Division.

The pursuit of long term basic science goals make up most of the Division's work but this is balanced by attempts to translate fundamental discoveries into clinical applications. The latter include the possible application of negatively-charged sugar molecules as novel anti-inflammatory or anti-cancer drugs and naked DNA and recombinant poxviruses as vaccines for prevention of certain infectious diseases or for the treatment of cancer.

Professor Chris Parish, Head of Division




Cancer and Vascular Biology Group

Leader: Professor Chris Parish

The Cancer and Vascular Biology group has been working for a number of years on the molecular basis of cell adhesion, cell migration and cell invasion, with a particular emphasis on the immune system, tumour metastasis and the growth of new blood vessels (angiogenesis). Of particular interest has been the role of anionic carbohydrates, such as heparan sulfate, in these processes. In addition the Group aims to apply its basic research findings to the development of new drugs which inhibit inflammation, cancer spread and angiogenesis. Considerable amounts of external research funding has been obtained to finance the drug discovery programs.


Cellular Laboratory

Leader: Professor Chris Parish

A major interest of the Cellular Laboratory of the Cancer and Vascular Biology Group is to examine cellular aspects of cell migration and invasion with the role of heparan sulfate and the heparanase enzyme in these processes being a key area of study. The research of the laboratory includes an analysis of leukocyte entry into inflammatory sites, the metastatic spread of tumour cells and angiogenesis. The ultimate aim of these studies is to generate, in the collaboration with chemists, heparan sulfate mimetics as inhibitors of cell migration and invasion that can be employed as novel anti-inflammatory, anti-metastatic and anti-angiogenic drugs. The laboratory is also interested in harnessing normal inflammatory responses against pathogens to combat the growth of solid cancers.

Recent research highlights are:

  • The group has had considerable experience in designing sulfated oligosaccharide-based compounds as drug candidates, this part of the group's research being supported for eight years by a large Research and Development grant from Progen Industries, Brisbane. Sulfated oligosaccharide-based inhibitors of the heparanase enzyme have been synthesised and identified, with a sulfated oligosaccharide, termed PI-88, being found to be a potent inhibitor of angiogenesis and heparanase activity. Preclinical testing has shown that PI-88 can inhibit primary tumour growth and metastasis of a number of cancer types. Phase II clinical trials of this drug are well underway in cancer patients.

  • A very productive collaboration has developed during the last 3 years with Professor Martin Banwell, Research School of Chemistry, ANU in which sulfated pseudo-sugars have been synthesised as heparan sulfate mimetics. This project has also been funded by our commercial partner, Progen Industries. Although the initial aim of this collaboration was to produce better heparanase inhibitors, a number of sulfated pseudo-sugars have been identified that selectively inhibit certain protein-heparan sulfate interactions. Such drugs have potential as anti-angiogenic, anticoagulant, antiviral and antilipaemic agents.

  • The laboratory has been studying the plasma protein, histidine-rich glycoprotein (HRG), for many years, particularly regarding the ability of the protein to inhibit cell adhesion by masking cell surface carbohydrates. Recently, however, it became clear that HRG plays an important role in the immune system by interacting with the complement system and by preventing the insolubilisation of complexes between antibody and antigen (termed immune complexes). In fact HRG also assists in the uptake of these complexes by phagocytic cells. Thus HRG is probably a key molecule in regulating complement activity and in aiding the elimination of immune complexes from the circulation. In fact, deficiencies in HRG may lead to immune complex-associated diseases such as rheumatoid arthritis (RA) and systemic lupus erythematosis (SLE). In a related study it has been shown that HRG can tether plasmin/plasminogen to the surface of cells and potentially aid cell invasion. Thus HRG represents a multifunctional protein that appears to play an important role in the immune system, inflammation and wound healing. A major focus of the laboratory in the future is to better understand the functional significance of this intriguing plasma protein.

  • In a collaboration with Dr Paul Foster's group in the Division of Molecular Biosciences, JCSMR, a new approach to cancer immunotherapy has been developed. Currently most attempts at cancer immunotherapy involve the generation of CD8+ cytotoxic T lymphocytes (CTLs) against tumour-specific antigens. Recently we demonstrated that tumour-specific CD4+ T cells, that exhibit a cytokine secretion profile characteristic of Th2 cells, are capable of clearing established lung and visceral metastases of a B16 melanoma that is resistant to CTL lysis. Clearance of the lung metastases by Th2 cells was found to be dependent on degranulating eosinophils, with the eosinophil chemokine, eotaxin, playing an essential role. In contrast, tumour-specific CD4+ Th1 cells, that recruited macrophages into the tumour, had no effect on tumour growth. This work provides the basis for a new approach to cancer vaccination that is effective against CTL-resistant tumours and is, potentially, less susceptible to immune evasion. Further analysis of the molecular and cellular basis of this system is underway.

  • A productive collaboration has developed with Dr Joe Altin, BaMBi, ANU in which a procedure has been devised to tether the extracellular domains of cell surface receptors to cell membranes. This technology has been used to graft costimulator molecules, such as CD40 and CD80, on to tumour cell surfaces to produce better cancer vaccines. The technology is also being used to target liposomes containing cytotoxic drugs to sites of angiogenesis in humans, such an approach being potentially a potent means of inducing tumour regression. Additional applications of the technology are to target antigens to dendritic cells using single chain antibodies as a means of developing better vaccines and to use the technology as a delivery vehicle for gene therapy.



Molecular Mechanisms Laboratory

Leader: Dr Mark Hulett

The Molecular Mechanisms Laboratory of the Cancer and Vascular Biology Group focuses on understanding the molecular basis of cell invasion, with particular interest in inflammation, tumour metastasis and new blood vessel growth (angiogenesis). The major barrier for invading tumour cells, migrating leukocytes, and growing blood vessels (endothelial cells) is the basement membrane (BM) that surrounds the vessels, and the extracellular matrix (ECM), which forms a scaffold in tissues to hold cells together. The BM and ECM are composed of an interlocking network of proteins and complex carbohydrates, and for cells to breach this barrier they deploy a battery of enzymes that break down these proteins and carbohydrate components. The major carbohydrate is heparan sulphate (HS), which acts as the glue to maintain the integrity of the BM and ECM. The enzyme responsible for cleaving HS, heparanase, has been shown to play a key role in the degradation of the BM and ECM, and its activity strongly correlates with the metastatic capacity of tumour cells and the migratory capacity of leukocytes and endothelial cells. HS in the ECM also binds a number of angiogenic growth factors, and the release of these by heparanase, promotes angiogenesis and tumour growth. Following our recent cloning of mammalian heparanase, we have been able to develop the tools to investigate how heparanase functions at the molecular level and to directly determine the role of heparanase in cell invasion, angiogenesis and inflammation.

Over the last year our major research achievements include: (i) demonstrating that mouse, rat and human heparanase are all processed in a similar manner, from a ~65kDa inactive pro-form, to a 50kDa active form; (ii) producing direct evidence that heparanse does indeed play a critical role in tumour metastasis using a heparanase mRNA antisense approach; (iii) the generation of a mouse heparanase gene targeting construct for the inactivation of the heparanase gene in mice; (iv) the identification of novel cell surface receptors for human heparanase; and (v) making significant progress towards understanding the molecular basis of heparanase gene regulation by identifying key transcription factors and their DNA binding sites in mammalian heparanase gene promoters. We are currently working towards (i) further understanding the molecular basis of heparanase function at the structural level, (ii) identifying the protease(s) responsible for processing the enzyme to its active form, and (iii) generating gene targeted mice that lack heparanase in specific cells and tissues to further define its role in cell invasion and angiogenesis.



Matrix Biology Laboratory

Leader: Dr Craig Freeman

Research within the Matrix Biology Laboratory complements that of the Molecular Mechanisms Laboratory by focusing on the biochemical basis of cell invasion during cancer spread (tumor metastasis), inflammation and during new blood vessel growth (angiogenesis). We are also investigating the roles that the sulfated carbohydrate heparan sulfate (HS) and its degradative enzymes play in health and disease.

HS plays a vital role in many biological processes, including cell growth and development, cell attachment to the surrounding matrix, the breakdown of triglycerides and the entry of viruses and other pathogens into cells. Many biologically important proteins, enzymes and growth factors bind to cell surface HS which can regulate their physiological actions. To ensure the specificity of their actions, many of these proteins recognise unique sugar sequences within the HS molecule, which is quite variable in its structure. We are therefore developing procedures to determine these particular sugar sequences which will allow us to design novel drugs (HS-mimetics) that mimic that specific HS sugar sequence. These drugs may then be used to specifically inhibit various physiological and pathological processes involving HS-protein interaction. For example, since tumor growth is critically dependent upon the development of a new blood supply, the selective blocking of angiogenic growth factor binding to cell surface HS has become a novel way to interfere with tumor development.

HS is also a key component of the extracellular matrix (ECM) and the vascular basement membrane that surrounds the blood vessels and acts as a barrier to cell invasion during tumor metastasis. Malignant tumor cells have elevated levels of the enzyme heparanase, which degrades HS, causing breakdown of the ECM structure and allowing tumor cell invasion. Heparanase is normally involved in embryonic development, angiogenesis, wound repair and inflammation, permitting cell migration through the ECM and the release of growth factors stored within the ECM that stimulate cell growth. However, heparanase activity secreted by a growing tumor may also release these growth factors, stimulating further tumor growth and new blood vessel growth that can allow subsequent tumor cell escape. Similarly, the uncontrolled invasion of leukocytes into the ECM can lead to inflammatory diseases such as inflammatory bowel disease and the progression of autoimmune diseases, such as multiple sclerosis and rheumatoid arthritis.

Previously, our group identified the HS-mimetic PI-88 which is both an effective inhibitor of heparanase activity and angiogenenic growth factor binding to HS. In animal models, PI-88 prevented the growth and spread of cancer and it is currently undergoing clinical trials in cancer patients. In conjunction with Dr Martin Banwell at the Research School of Chemistry, ANU, we have developed a new series of HS-mimetics. Preliminary studies have shown that some of these compounds exhibit potent and selective inhibitory activity against heparanase activity and the binding of various growth factors, chemokines and proteins to HS. Such compounds may lead to the development of a new series of drugs to prevent cancer, inflammation, viral infection and to lower blood triglyceride levels.

Within the Cancer and Vascular Biology Group we are collaborating with Professor Chris Parish and Dr Mark Hulett to investigate the roles of heparanase in both health and disease, including the factors which regulate its normal activity. Using a novel enzyme assay, we were one of the first laboratories to purify and clone human heparanase, demonstrating that only one heparanase activity is expressed. Therefore heparanase represents an excellent target for the development of anti-cancer and anti-inflammatory drugs. We are currently characterising proteases that activate the enzyme as well searching for the presence of endogenous inhibitors to determine if control of these factors can also be used to inhibit heparanase activity. We are also studying the interaction between tumor cells and blood platelets which occurs during tumor metastasis as well as identifying important ligands involved in this interaction. Our overall goal is to better understand both the biology and structure of heparanase to enable the development of inhibitors of the enzyme, which will hopefully lead to new drugs to prevent cancer spread, angiogenesis, and inflammation.



Medical Genome Centre

Leader: Professor Chris Goodnow


Many of the health problems we face today - cancer, autoimmune diseases, allergy, cardiovascular disease, osteoporosis, - stem from a discordance between genetics and environment. Our genetic code was selected to survive for a shorter period of time in a very different world, and it is inevitably out of step with the lifestyles we lead today. In some cases we know what to do to fix this imbalance, like putting on a hat and sunscreen to offset genetic susceptibility to the sun. For many cancers and numerous other diseases such as diabetes, rheumatoid arthritis, osteoporosis or obesity, the solutions are not so straightforward.

Rapid advances in gene technology are bringing us to the point of visualizing the imbalance between our genetic code and lifestyle/environment. A worldwide effort has already produced a map and determined the spelling of the forty-thousand genes in our genetic 'dictionary'- collectively referred to as our genome. The epic challenge for the next decade is to decipher what these gene words mean. How are they combined into the molecular language that guides the cells in our body and determines how well we cope with different environmental stresses? Which gene products are good targets for new drugs to prevent or cure common diseases? Differences in the spelling of those gene words underlie differences in susceptibility to modern diseases and divergent responses to particular therapies, and gene-fingerprinting technology now allows a list of spelling differences to be compiled from each person's unique genetic dictionary. This great opportunity to advance health care hinge on establishing the function of genes and how they interact.

To decipher the functional meaning of genes and their contextual interactions, laboratory mice represent a crucial Rosetta stone. The mouse genome has also now been sequenced, and almost all of the genes in mice match a human counterpart with only small changes in their spelling. While surprising given the large differences in external appearance, the mouse and human genetic languages are in fact no more different than Chaucer's English and modern English. This underlying similarity makes it possible to define the function of human health genes in the mouse in a way that is impossible in humans.

The strategy being followed is genome-wide mutagenesis in the mouse at an unparalleled scale. In the last year, the Medical Genome Centre has successfully analysed a large panel of new mutant strains to reveal functions of many key genes. These strains were derived from libraries of laboratory mice in which single letters in the spelling of many of the genes in the mouse genetic dictionary have been changed by random chemical mutagenesis. The ENU1 library comprised 185 pedigrees of ENU mutagenised C57BL/6 mice, bred over three generations to yield at least 25 potentially recessive homozyogous offspring in each pedigree. Collectively, we estimate that this library scanned 15,000 loss of function mutations. By visual inspection and high-throughput screening of blood, this library yielded many new mutant mouse models to discover and understand genes controlling obesity and diabetes, cardiovascular disease, kidney disease, limb and spine abnormalities, eye function, melanocyte function, coordination, seizures, dermatitis, colitis, and disorders of lymphocyte development such as autoimmunity, immunodeficiency, and leukemia/lymphoma.

State-of-the-art facilities for transgenic mouse production, sperm freezing, and database tracking of genetic and phenotypic data have been developed to support this resource and provide a service to researchers. The chromosomal location of the defective gene in each of the mutant strains has been determined, employing an efficient strategy for gene mapping many mutant strains in parallel. In most of the strains, the defective gene has been identified through resequencing of mRNA, revealing critical functional domains in the proteins these genes encode. In parallel, we have defined the precise cellular abnormalities brought about by each mutation by cell and biochemical analysis. From the immunological screen on blood cells, we have shown that the genome-wide mutagenesis approach yields clusters of mutant strains from a library of 185 families, to reveal key functional elements at many successive steps in the molecular pathway of T and B cell activation. To use the dictionary analogy, this approach is ideally suited to the problem of how individual genes are linked together to form a molecular language, because it identifies many of the key genes in the molecular sentences that cells use to communicate and respond to stress, rather than individual gene words in isolation.

To build on our genome-wide mutagenesis technology, more sophisticated screens are underway. With Professor John Bell and Dr Richard Cornall at Oxford University, a collaborative Programme Grant from The Wellcome Trust employs sophisticated immune cell challenges and sensitization with a T cell receptor transgene to identify a broad range of genes controlling the immune response to antigen. A Special Programme funded by the Juvenile Diabetes Research Foundation and the NH&MRC is using a pair of transgenes in the mutagenized mouse stock to sensitize the discovery of genes that control diabetes. A consortium of the ANU, Monash University, the Garvan Institute, and the University of Queensland was awarded funds from the Commonwealth Government Major National Research Facilities program to establish a much larger National Facility, the Australian Phenomics Facility. Design and construction of the facility on the ANU campus is underway with expected completion in February 2004.

 

Mining the genome for disease genes

During 2001 and 2002 the sequence of our DNA, the human genome, was completed, along with the genome sequence for the laboratory mouse. These accomplishments are unquestionably major milestones in the history of biomedical research. Nevertheless, completion of the human genome sequence represents only the first step in unlocking the information encoded in our DNA. The challenge we now face is to identify all genes, the unique pieces of DNA in the genome that encode proteins, within the vast genome sequence and to decipher how these genes enable our bodies to grow, develop and fight disease.

This is a tremendous challenge. It is estimated that the genomes of humans and mice contain at least 40,000 genes and currently we only understand the importance of a fraction of these genes. At the Medical Genome Centre of the John Curtin School of Medical Research we have developed a process that represents a powerful, new approach for discovering genes important in disease. This process in effect pinpoints genes in the genome based on their importance in specific physiological, developmental and disease processes. It is difficult to accurately predict the importance of genes to specific physiological and disease processes from computer analyses or in vitro methods such as tissue culture. Because of these limitations, our process utilises the gold-standard laboratory model for human physiology and disease - the mouse.

The process we have developed, called genome-wide chemical mutagenesis, is initiated by subtly altering the DNA code of hundreds of genes simultaneously in a laboratory mouse by treating it with the chemical ethyl-nitroso-urea (ENU). The ENU has its effect on genes by inducing random point changes or mutations in the chemical sequence of DNA across the genome. These point mutations have the potential to affect the function of proteins encoded by the chemically altered genes and ultimately cause significant changes in physiology or disease susceptibility. These gene altering point mutations are not apparent in the initial ENU-treated mouse, but they can be detected in his offspring by screening them for specific characteristics or 'phenotypes' that indicate that a gene critical to a physiological or disease process has been mutated. Many of the screens we use are very similar to screens done in a hospital on human patients. Once a mouse is identified with a disease phenotype or resistance to diseases, we are then able to identify the gene that was mutated in that mouse by using a combination of genetic mapping and DNA sequencing techniques. Most importantly, by starting with a mouse that exhibits a disease phenotype we know that the gene mutated in that mouse is critical to the development of that disease. Thus, this process allows us to unequivocally identify genes involved in different disease processes.

Using this approach, we have identified over 50 new strains of mice that exhibit phenotypes directly related to human disease. These phenotypes include immunodeficiency, late and early onset obesity, diabetes, neurological disorders and cancer. We have now mapped and characterised many of the mutated genes that result in the observed disease phenotypes with collaboration in San Diego and Houston, we have also formed a biotechnology start-up company, Phenomix to accelerate the process of developing better treatments from this technological approach. From these studies it is clear that many of the genes identified using these mice have never been characterised. In addition, this approach has led to the discovery of important new functions of previously identified genes in critical processes such as red blood cell development. Genome-wide chemical mutagenesis is allowing us to mine deeply into the genome for genes that are critical to many different disease processes. The information derived from this genetic excavation will be critical in the development of new therapeutic strategies for the treatment of a number of human diseases.

Dr Keats Nelms



Australian Cancer Research Foundation Genetics Laboratory

A one million dollar grant from the Australian Cancer Research Foundation in 1997 made possible the establishment of the ACRF Genetics Laboratory in the Medical Genome Centre. The laboratory's focus is on developing genome-wide mutagenesis resources for studying candidate human cancer genes and novel laboratory mouse models to accelerate cancer research at both the basic and clinical ends of the spectrum. Four new mouse strains to illuminate cancer genes have been obtained from the ENU1 forward genetics library. One of these strains, Plastic, carries a single dominant gene defect that results in acute T cell lymphoblastic leukemia, providing a valuable model for understanding this important form of childhood leukemia. Peter Papathanasiou has mapped and identified the mutation in this strain, which creates a single change in a protein that appears to be frequently defective in human T cell lymphoblastic leukemia. The cancer protein normally regulates expression of many other genes in blood cells. He has shown that the protein is critical for the production of red blood cells, because it is necessary to maintain expression of receptors for stem cell growth factors as the cells differentiate.

Adele Loy has mapped the mutation in another cancer-prone strain, Bblast, which carries a semi-dominant gene defect that results in leukemia, lymphoma, osteosarcoma, chondrosarcoma and teratocarcinoma. These cancers arise because the mice carry a single misspelling of a protein called Tumor suppressor p53. Tsp53 is the most frequent defect in a wide range of human cancers, and controls a range of tumour and ageing processes. The Bblast strain therefore provides a valuable model for investigating cancers of many types. A third strain, carrying a purely recessive susceptibility to lymphoma and primitive myeloid leukemias, is currently in the gene mapping and identification phase.

Progress continued on a separate discovery project aimed at illuminating genes regulating solid tumours of the skin and cervix. This project involves a consortium with Dr Douglas Hanahan at the University of California in San Francisco, who has developed a sensitized mouse strain for skin and cervical cancer research, and Dr Simon Foote at the Walter and Eliza Hall Institute. The project is mapping cancer inhibitory genes between two inbred mouse strains, C57BL/6 and FVB, and conducting genome-wide mutagenesis to illuminate skin cancer inhibitory genes.

Genes and functions discovered by these efforts will be available to the research community to help in three key areas: a) primary prevention, where illuminating patterns of inherited susceptibility will help to resolve environmental risk factors and target preventative measures, b) early diagnosis, where alterations in gene spelling and expression pattern will help to distinguish cancer cells early and predict the best course for treatment-therapy and c) prevention of secondary tumours, where the genes identified will provide new targets for drugs and new avenues for chemotherapeutic or immunological intervention.

 

Goodnow Laboratory

Leader: Professor Chris Goodnow

Our research aims to understand how immune cells make a fundamental decision: either to fight or to disarm. The process of deciding which immune cells should fight and which should disarm is key to our ability to resist infection and parasitism. Mistakes in this process result in autoimmune diseases, allergy, lymphoma, and leukemia. Moreover, drugs and other ways to alter fight or disarm decisions are sorely needed to improve the success of organ transplantation and treatment of autoimmune diseases and metastatic cancer.

The immune system is made up of billions of immune cells called lymphocytes. By a remarkable gene shuffling process akin to a poker machine, each lymphocyte carries a unique receptor, enabling every lymphocyte to detect a different set of molecules termed antigens. Some lymphocytes have receptors for foreign antigens that are unique parts of the molecular makeup of different infectious organisms. When these rare lymphocytes bind a foreign antigen during an infection, they receive a signal to fight. The lymphocyte first multiplies to make many clones of itself, and then the cells elaborate destructive compounds that neutralize the infectious antigen.

By chance, other lymphocytes carry receptors for self antigens, ie. parts of our own normal tissues and body fluids. When a lymphocyte binds a self antigen it normally receives a signal to disarm. Instead of multiplying and producing destructive compounds, the lymphocyte either commits cell suicide by apoptosis or the cell disarms itself by becoming functionally tolerant, ie. less responsive to antigens and less able to multiply or produce destructive compounds.

For a long time it was not possible to see how self-reactive lymphocytes disarm themselves. Our laboratory has developed ways to visualize this process in genetically modified laboratory mice called transgenic mice. By studying cells in the transgenic mice, we have discovered that each immune cell must run through a complex series of fight or disarm checkpoints before it can be fully launched into an immune response. In some ways, the process resembles the sequence of fight/disarm decisions in a military missile launch, which serve a similar purpose of preventing friendly fire.

Members of the laboratory are deciphering different fight/disarm checkpoint processes, using a combination of biochemistry, cellular immunology, genetic analysis, and transgenesis. At each of these checkpoints, we are focusing much of our work on elucidating how it is that antigen receptors on lymphocytes can trigger several different cell fates ranging from cell proliferation to cell death. Three examples of our work that have been published this year are summarized below.

T cell tolerance and destruction of pancreatic islets

The cellular and molecular processes regulating CD4 T cell responses to self antigens that are restricted to specific organs (organ-specific tolerance and autoimmunity) are being investigated through an NIH and JDRF-funded project involving a unique transgenic mouse model. The core of this model is a "TCR-transgenic" mouse where most CD4 T cells react with a model antigen, and where the model antigen is made by pancreatic islet beta cells. The islet-reactive T cells are normally regulated so that they can cause inflammation of the pancreatic islets, but this inflammation does not progress to diabetes or autoantibody production. This regulation is broken by one or more genes from the NOD strain, an excellent animal model for spontaneous Type 1 diabetes in humans, but it has been difficult to identify what regulatory processes are primarily affected. Dr Sylvie Lesage has discovered that one of the main actions of the diabetes susceptibility genes is to dramatically reduce the efficiency of islet-reactive T cell deletion in the thymus. Some of the diabetes genes act within the islet reactive T cells, interfering with the normal processes that censor these forbidden clones of cells. By revealing the primary cell regulatory processes that are disturbed by diabetes genes, this experimental model provides a unique opportunity to define the molecular pathways regulating diabetes and other autoimmune diseases.

Memory receptor tail

Our ability to resist infection stems from a cardinal property of the immune system, namely an ability to mobilise a much higher and faster antibody response when the antigens that make up a virus or bacteria are seen a second time. This phenomenon of immunological memory lasts for years after infection or immunisation, but its cellular and molecular basis is still poorly understood. Mr Stephen Martin has defined a key role for the 'BCR Tail sequence' in promoting memory-level antibody responses. It has been known for many years that B cells switch portions of the antibodies they produce from IgM to IgG as part of the memory process. Among the many changes that result from switching to IgG, one intriguing change is in the sequence and length of the antibody segment that serves as a receptor for antigen - the transmembrane and cytoplasmic tail. Through a sophisticated combination of transgenic mice and in vivo immunological analyses, Steve has shown that the memory-type IgG tail dramatically increases the number of progeny cells that are formed by proliferation of initially rare B cells that react to antigen. This finding explains the memory phenomenon by localizing it to a precise sequence of amino acids and a specific process - augmenting the clonal burst. This finding has wide implications for vaccination, allergy and autoimmunity, where B cells bearing the memory tail are formed.

Maintaining an army reserve

Infectious disease agents are constantly changing, with new or variant forms arising constantly, so that it is impossible to anticipate the form or fingerprint of an infection in advance. To tackle this problem, the immune system must keep on hand a reserve of billions of B lymphocytes marching about the body. Each cell carries a different antibody so that by chance at least one of these antibodies will be able to recognize and destroy any possible infectious agent. A central issue is how the size of this reserve population is regulated: immunodeficiency diseases result from it becoming too small, while common forms of lymphoma and leukemia result from it growing out of control. Through analysis of an ENU-induced mouse mutation, Ms Lisa Miosge has defined a critical regulator of this process, NfkappaB2 showing that this DNA-binding transcription factors acts within each B cell to promote persistence in the reserve population of recirculating mature B cells. This result helps explain how activating mutations in NfkappaB2, which have previously been demonstrated in B cell lymphoma, can contribute to the uncontrolled accumulation of these cells. Together with other research published at the same time, Lisa's work establishes that NfkappaB2 mediates the survival-promoting effects of a newly discovered B cell growth factor, BAFF/Blyss.



Immunity and Immunopathology in Infectious Disease

Dr Eva Lee, Dr Mario Lobigs and Dr Arno Müllbacher
Dr Mario Lobigs, Photo: JCSMR Multimedia Unit The general aims of the program are first, to generate new knowledge relevant to our understanding of the fundamental properties of immune responses at the molecular, cellular and whole system level with particular emphasis on immune responses against viruses and second, to study virus/host interactions at the cellular and molecular level and through this devise strategies for the prevention of viral disease.
Dr Mario Lobigs

The members of the program have wide expertise in immunology, immunopathology and molecular virology. Our current investigations focus on the different functions of cytolytic effector molecules, MHC class I antigen presentation, T lymphocyte responses against infection with viruses, bacteria and fungi, the cytotoxic T memory response, virus/host interactions in flavivirus assembly and replication, and viral immune evasion strategies. A large number of virus models including flaviviruses, poxviruses, influenza and parainfluenza viruses, alphaviruses, herpes viruses and adenoviruses are employed in these studies. The availability and establishment by our laboratories of gene targeted mice defective in immune effector molecules including perforin, the granzymes, and Fas receptor/ligand has allowed us to elucidate important host/parasite relationships in the context of the host immune response. Another important approach which is currently applied widely in the group is that of reverse genetics using full-length cDNA copies of flavivirus RNA genomes. These allow the in vitro synthesis of infectious viral RNA and thus structure/function studies in flavivirus replication and pathogenesis.

Progress in our research in the last year

Antigen dependent release of interferon-gamma by cytotoxic T cells upregulates Fas on target cells and facilitates exocytosis independent specific target cell lysis.

Effector cytolytic T (Tc) lymphocytes, deficient in the exocytosis-mediated pathway of target cell lysis, induce Fas on target cells and, in turn, delayed cell death and apoptosis via the FasL-Fas interaction. The induction of Fas can be blocked by anti- IFN-g antibodies. This Fas upregulation on initially Fas negative target cells is not mediated by T cell receptor-MHC/peptide signalling per se but by secreted interferon-gamma from Tc cells after antigen engagement. The Fas upregulation by Tc cells can be mimicked by treatment of target cells with rIFN-g. Tc cells from IFN-g ko mice do not induce Fas expression on target cells. Tc cell mediated Fas expression on third party, bystander, target cells does not enhance their susceptibility to lysis by these nominal effector cells. The results are discussed as to the possible relevance of the phenomenon in efficiency and regulation of the Tc cell response to infections by viruses.


Cell-mediated cytotoxicity in recovery from poxvirus infections

The availability of mutant and gene targeted knock out mice with defects in components of cellular cytotoxicity mediated by either the Fas or the exocytosis pathway permitted an analysis of their role in recovery from poxvirus infections. Ectromelia (EV), a natural mouse pathogen causing mouse pox, the closely related orthopoxviruses cow pox (CPV) and vaccinia virus (VV), each encode serpins which inhibit Fas mediated apoptosis and lysis of target cells. Nevertheless, differences were seen when the three viruses were inoculated into perforin-deficient mice: highly resistant C57Bl/6 mice became susceptible to low doses of EV; resistance to CPV increased whereas there was no effect on VV infections. Absence of the cytolytic granule associated granzymes (gzm) A and B rendered C57Bl/6 mice increasingly more susceptible to EV infections. Lack of both gzms rendered them as susceptible as perforin deficient mice, despite the presence of functionally active perforin. Elevated EV titres in liver and spleen of gzmAxB deficient mice, early after infection and before cytotoxic T cells were detectable, strongly suggests that these two gzms exert an anti-viral effect by a mechanism distinct from effector molecules of NK and cytotoxic T cells.

Lack of both Fas ligand and perforin protects from flavivirus-mediated encephalitis in mice

The mechanism by which encephalitic flaviviruses enter the brain to inflict a life-threatening encephalomyelitis in a small percentage of infected individuals is obscure. We investigated this issue in a mouse model for flavivirus encephalitis in which the virus was administered to six-week-old animals by the intravenous route, analogous to the portal of entry in natural infections, using a virus dose in the range experienced following the bite of an infectious mosquito. In this model infection with 0.1- 105 PFU of virus gave mortality in ~50% of animals despite low or undetectable virus growth in extraneural tissues. We have shown that the cytolytic effector functions play a crucial role in invasion of the encephalitic flavivirus into the brain. Mice deficient in either the granule exocytosis- or Fas-mediated pathways of cytotoxicity showed delayed and reduced mortality. Mice deficient in both cytotoxic effector functions were resistant to a low dose peripheral infection with the neurotropic virus.

 

Role of type I and type II interferon responses in the recovery from infection with an encephalitic flavivirus

We have investigated the contribution of the interferon (IFN)-a/b system, IFN-g, and nitric oxide to recovery from infection with Murray Valley encephalitis virus, using a mouse model for flaviviral encephalitis where a small dose of virus was administered to 6-week-old wild-type and gene knockout animals by the intravenous route. We show that a defect in the IFN-a/b responses results in uncontrolled extraneural virus growth, rapid virus entry into the brain, and 100% mortality. In contrast, mice deficient in IFN-g or nitric oxide production display an only marginally increased susceptibility to infection with the neurotropic virus.

Dr Eva Lee

Dr Eva Lee, Photo: JCSMR Multimedia Unit

 

Cross-protective and infection-enhancing immunity in mice vaccinated against flaviviruses belonging to the Japanese encephalitis virus serocomplex

The Japanese encephalitis virus serocomplex is a group of mosquito-borne flaviviruses that cause severe encephalitic disease in humans. The recent emergence of several members of this serocomplex in geographic regions where other closely related flaviviruses are endemic has raised urgent human health issues. Thus, the impact of vaccination against one neurotropic virus on the outcome of infection with a second, serologically related virus is unknown. We show here that immunity against Murray Valley encephalitis virus in vaccinated mice can cross-protect but also augment disease severity following challenge with Japanese encephalitis virus. Immunepotentiation of heterologous flavivirus disease was apparent in animals immunized with a ‘killed’ virus preparation when humoral antiviral immunty of low magnitude was elicited.

 

Viral Immunology Group

Leader: Professor RV Blanden

In adult humans, many of the B lymphocytes responsible for memory and secondary antibody responses display mutations in the genes encoding the protein chains of the antibody molecule. These mutations contribute to the phenomenon of affinity maturation of antibody responses in which secondary and later responses show improvement in affinity over early responses, thus improving the protective potential of the antibodies.

Conditions under which hypermutation of antibody genes is induced in B lymphocytes and the mechanisms of selection of B cells with mutated antibodies of high affinity against the immunizing antigen have been well defined. However the molecular mechanism of somatic hypermutation remains one of the major unsolved mysteries in immunology. We are testing an hypothesis involving pre-mRNA from rearranged variable regions of antibody genes as the primary target of sequence variation. Reverse transcription then produces mutated cDNA which replaces the original gene by homologous recombination. Predictions of this molecular model are being tested using transgenic mice.

 

Immunopathology Research Group

Dr Bill Cowden and Dr Brett Charlton

Dr Bill Cowden,  Photo: JCSMR Multimedia Unit Work in the Immunopathology Research Group is focused on developing novel treatments for and understanding key biochemical processes underlying debilitating cell-mediated disease processes. As the term immunopathology suggests, the Group is interested in the pathological (tissue damaging) changes that occur as a direct result of either normal or abnormal immunological processes.
Dr Bill Cowden

Autoimmune diseases such as multiple sclerosis (MS) and rheumatoid arthritis are examples of pathologies that occur as the result of an abnormal immunological process because in these cases cells of the immune system appear to 'attack' what seems to be healthy tissue rather than performing their intended role of dealing with invading pathogens. Such cell-mediated autoimmune diseases are characterised by an accumulation of leucocytes, white blood cells that are the mainstays of the immune system, in the affected tissue. Thus, in the case of MS an abnormal accumulation of leucocytes is found in the brain and spinal cord while in arthritis this build-up occurs in the diseased joint.

The usual role for these cells is in fighting infection but in the case of autoimmunity the cells appear to 'recognise' normal tissue as being 'foreign' and as a consequence of this 'misinterpretation' these cells attack the affected tissue. This results in damage to the tissue and this is reflected in clinical symptoms. In the case of MS, symptoms range in type and severity depending upon the areas of the brain affected. Thus, transient mild weakness or tingling in the limbs may be the only symptom in some MS patients while others may suffer paralysis or blindness. In the case of arthritis, symptoms are invariably directly associated with the inflamed joint and once again the clinical signs range in severity from mild discomfort to crippling disfiguration.

Since an essential component of these diseases is the accumulation of inflammatory cells, a potential approach to treating them is to reduce or prevent the accumulation of leucocytes in the affected tissue (inflammatory site). White blood cells normally circulate through the body, along with erythrocytes (red blood cells), inside the vascular system (blood vessels). The mechanism by which leucocytes arrive at the inflammatory site is both complex and incompletely understood. There are, however, many potential points at which this process may be interfered with. Work carried out in collaboration with others within the School and at the Neurosciences Research Group at The Canberra Hospital has identified a promising biochemical target for preventing cell migration. Thus, research in our Group is currently targeting one of the final biochemical steps involved in the migration of the leucocytes from blood vessels into the adjacent tissue. The importance of translating basic findings into clinical outcomes is central to our efforts and since experimental results have been promising we hope to trial the potential treatment in the clinic. Therefore, one of our goals over the next 12 months is to initiate and facilitate a multi-centre clinical trial in the treatment of relapsing-remitting MS.

Another major interest of the Group is the role of a molecule, called nitric oxide, in autoimmune processes. This molecule is produced in large amounts by certain leukocytes that have been stimulated by invading pathogens, especially bacteria and protozoan parasites (malaria for example) that live and replicate inside host cells. Infection with some viruses also elicits the production of nitric oxide. This molecule is chemically reactive and this attribute may be responsible for its ability to inhibit the growth and spread of certain infectious agents. This property may also contribute to its widely reported immunopathological properties in both infectious and in autoimmune diseases. Another way of looking at this is that cell of the immune system produce nitric oxide in order to damage invading micro-organisms but in the process, normal tissue in the immediate vicinity can also be damaged by this chemically reactive molecule. On the other hand, nitric oxide is also produced in small quantities by cells other than those of the immune system. In this situation, nitric oxide has some roles that are directly related to normal, non-immunological processes such as the control of high blood pressure and neurotransmission. Other groups within the School study some aspects of these activities.

The Immunopathology Group has investigated the potential pathological role of nitric oxide in some autoimmune diseases such as type-1 or juvenile-onset insulin-dependent diabetes and in a multiple sclerosis-like disease. In contrast to many reports in the medical and scientific literature, our group has discovered that in some autoimmune disease settings, nitric oxide has a down-regulating effect on the disease. In other words, in addition to possibly having a localised tissue damaging role in these diseases, it may, in contrast, actually slow down or reverse the disease process. In this regard our group has found that in the absence of nitric oxide production by the immune system, some autoimmune diseases are actually more severe and protracted than would otherwise be the case. This finding implies that nitric oxide may function in a "feed-back" manner to signal the immune system to reduce or halt its attack. This was further supported by our discovery that by increasing systemic levels of nitric oxide, either through immunological manipulation or drug treatment, these diseases were less severe. This finding is perhaps important from a therapeutic perspective, and because of this the group is actively studying potential means by which nitric oxide production can be elevated in the hopes that such therapy may be of benefit in the treatment of autoimmune diseases.

 

Human Genetics Group

Leader: Professor Simon Easteal

My research is aimed at understanding human genetic variation as it relates to disease. I take a broad view, recognising the importance of the evolutionary forces that have shaped the structure of the human genome and the nature of human genetic diversity. Our investigations fall into two areas: Mechanisms of gene and genome evolution, and the nature of human genetic and genomic variation.

Gene and genome evolution

In mammals genetic novelty arises through genetic and evolutionary processes such as mutation, gene duplication, gene conversion, genetic drift and natural selection, occurring in large and structurally complex genomes. Information relating to genome and protein function, the processes by which functional novelty has arisen and patterns of species evolution are contained within DNA and protein sequences. We use a comparative approach to the interpretation of this information, investigating differences in genomes, genes and the proteins they encode, among related species, particularly humans and other primates.

Human genetic and genomic variation

Medical genetics has largely been focused on understanding single gene defects. Less attention has been given to genetic disorders that have a polygenic basis, such as mental illness, cardiovascular disease and diabetes. Although these are more important from a public health point of view, they are technically more difficult to investigate. This situation is changing largely through the technological advances of the human genome project. Associated with this change is an increased recognition of the importance of the normal range of human genetic variation, and its importance in relation to disease prevention. Understanding the relationship between molecular genotypes and disease phenotypes is becoming more dependent on population-based rather than family-based investigations. Our research is directed at understanding the basis of a number of genetic disorders, and of the patterns of normal genetic variation in human populations.One particular focus is the genetic basis of personality variation, which is associated with a predisposition to common forms of mental illness involving depression and anxiety. This work is done in collaboration with the NH&MRC Centre for Mental Health Research.

 

Vaccine Immunology Group

Leader: Professor Ian Ramshaw

After two decades of intense research in HIV vaccine development, recent successes with several commercially viable vaccine candidates now offer hope. Studies in animal models, including our own, demonstrate that DNA prime: poxvirus boost strategies can induce potent T cell responses. Furthermore, these responses confer significant protection against both HIV and SHIV challenge. With the support of a US National Institutes of Health award for A$30 million to a consortium of Australian researchers we will test this AIDS vaccine concept in clinical trial in early 2003. Our Group has been responsible for construction and testing of the DNA component of this vaccine. This is the largest grant yet given to an Australian research team from an international agency. Several significant obstacles remain, however, for eventual wide scale application of these approaches in humans. Importantly, since the HIV epidemic is global, and the different isolates of HIV differ significantly in sequence homology, an effective vaccine must be able to protect a genetically diverse human population against a wide range of viral isolates. We are currently developing the next generation of HIV vaccines to address this issue (see details below).

Immune Regulation and Vaccine Development Laboratory

Leader: Professor Ian Ramshaw

The focus of our research is to study the factors important in generating high levels of protective immunity to vaccination. In particular, we are concentrating on the use of prime boost immunisation to stimulate high levels of cell-mediated immunity. We have been studying why this vaccination strategy generates such a powerful response. Using a tetramer staining technique we have been able to show that DNA vaccines are able to induce very effective or high avidity T cells which are then expanded by boosting with a recombinant fowlpoxvirus vaccine encoding the same vaccine antigen. The quality of an immune response generated by a particular vaccine strategy may therefore be as important as the levels of immunity induced. Vaccines that generate T cell populations of high avidity, optimising the early detection of infected cells, offer new hope for development of effective prophylaxis against pathogens such as HIV, which have presented major problems for vaccine development.

 

Synthetic Vaccines Laboratory

Leader: Dr Scott Thomson

Research in the laboratory focuses on developing new vaccine and therapeutic strategies for a broad range of human diseases including viral infections eg HIV-1, Hepatitis C virus, and tuberculosis, and cancer eg Cervical Cancer and Nasopharyngeal Carcinoma. The laboratory is closely involved with the Australian HIV Vaccine Consortium, which has a large NIH funded design and development contract to carryout two HIV-1 clinical trials in Australia and SE Asia. The HIV consortium work includes ongoing development work on the two DNA vaccines we constructed which will be used as the first component of the immunisations in the clinical trials for two major HIV-1 subtypes, A/E and B.

The laboratory is also continuing to develop the new scrambled antigen vaccine (SAVINE) strategy. This strategy is particularly suited for inducing killer T cells or cytotoxic T cells (CTL) which patrol the body and kill other cells that have been infected or have become cancerous. This technology which is a major breakthrough in T cell vaccine design, is essentially a genetic-based delivery strategy for overlapping peptide sets. Overlapping peptide sets that span a virus or protein antigen are often used to identify T cell epitopes but have far too many components to be used as a vaccine. The SAVINE strategy means that the long unsolved problem of population coverage can now be catered for while retaining the safety characteristics of short peptides. The lab has already synthesised and is testing an HIV-1 vaccine that incorporates sequence from the entire virus. We are currently synthetising a hepatitis C virus SAVINE (whole virus) and Tuberculosis SAVINE (13 key immunogenic antigens). We are also considering constructing a SAVINE using cancer antigens since such antigens cannot be used whole due to their onogenic potential.

Older technology based on polyepitope vaccines, where multiple contiguous T cell epitopes are used to design synthetic antigens, is continuing to be developed through collaborations with the EBV unit and CRC for vaccine technology (Queensland Institute of Medical Research) and the Sir Albert Sakzewski Virus Research Center (University of Queensland). These collaborations are developing vaccines against Epstein-Barr virus which causes glandular fever and Human Papilloma virus which is the leading cause of cervical cancer.

The laboratory also has a strong interest in various immunomodulatory molecules and delivery vectors which when combined with our various antigen technologies may enhance vaccines in the future and add to our understanding on how vaccines operate.



Initiators and Regulators of Immunity Laboratory

Leader: Dr Joanne Banyer

The nature of work in the Initiators and Regulators of Immunity Laboratory aims to further our understanding of how immune responses are initiated or avoided by cytokines, pathogens, and vaccine agents.

This knowledge may be used to design more effective vaccines and to identify immunoregulatory molecules that may be used as vaccine adjuvants, or immunotherapeutics that re-direct inappropriate or enhance immune responses to pathogens.

Dendritic cells (DC) are the immuno-interpretors of the innate immune cell system that identify, process, and present antigens from micro-organisms to adaptive immune cells.

Dr Joanne Banyer, Photo: JCSMR Multimedia Unit
Dr Joanne Banyer

Whether the DC initiates an adaptive cell mediated immune (CMI) or humoral immune (HI) response is dependent on the nature of the pathogen and the types of cytokines that are released into the microenvironment by innate immune cells at the site of infection. These combinations of factors act on DC's to develop immunoregulatory properties which communicate to adaptive immune cells the identity of the pathogen and the type of immune response which should be generated against the pathogen. How the DC communicates this information and regulates adaptive immunity is not completely understood. To address this issue our laboratory is investigating the effects of CMI and HI cytokines on the immunoregulatory properties of DC's. Our approach utilises a combination of biological and molecular analysis of ex vivo DC's and DC cell lines to identify immunoregulatory molecules that are differentially regulated by these cytokines.

Interactions between the pathogen and the DC provide the perfect opportunity for the pathogen to modify the type of immune response that develops. Pathogens such as HIV and Hepatitis C utilize these interactions to reduce the immunostimulatory properties of DC's thereby disrupting clearance of the virus and supporting viral persistence. The immune avoidance mechanisms elicited by these viruses are also not completely understood. Our laboratory is investigating these interactions using Hepatitis C infection of human monocyte derived DC's as a model system. Previous studies of chronically infected patients have indicated Hepatitis C persistently infects and disrupts the immunoregulatory function of these cells. To establish how the virus achieves this we are targeting the initial interaction between the virus and non-infected DC's utilising both biological and molecular analysis.

Many vaccines are based on the use of pathogen-derived vectors and some pathogen molecules, such as CpG sequences, are used as vaccine adjuvants to enhance immunoresponsiveness to vaccines. The nature of these vaccine agents, however also influences the type of immune response that a DC directs. In addition, some of these vaccine agents have been shown to elicit immune avoidance mechanisms that target the immunoregulatory properties of DC's. To further understand the effects of vaccine agents on the immunoregulatory properties of DC's our laboratory has examined the effects of DNA and viral vaccine vectors in combination with CMI and HI associated cytokine stimulus of DC's. This work established that in the presence of CMI-associated cytokines DC's are more efficient at taking up and processing these vaccine agents. Also, in combination with these cytokines the vaccine agents can enhance the immunoregulatory properties displayed by the DC's and therefore are likely to trigger stronger immune responses. Similar to other recent studies, we found that particular viral vaccine agents, vaccinia and fowl-pox, affect the viability of the DC, however we established that particular CMI associated cytokines enable the DC to process and present the viral antigen prior to cell death. In addition, preliminary studies in our laboratory suggest that DC's utilise other mechanisms, such as cross-presentation, to present virally encoded antigen. These studies have highlighted the important role of cytokines that enable DC's to handle pathogen-derived antigen appropriately and thereby support their potential use in effective immunization strategies.

Design and engineering of highly effective vaccines in the future will benefit from a more thorough understanding of the immune stimulatory and inhibitory properties of vaccine agents so these properties may be altered to better support generation of strong and appropriate immune responses.



Infection and Immunity Group

Leader: Dr Gunasegaran Karupiah

Dr Guna Karupiah, Photo: JCSMR Multimedia Unit

Viral diseases are a major health, social and economic problem worldwide. Effective vaccines have been successfully developed for only a small minority of disease-causing viruses and available antiviral agents are of limited efficacy and high cost. Furthermore, little effective intervention is currently available to minimize the often, serious immunopathology in established infections.

Dr Guna Karupiah

The immune system uses several strategies to fight virus infections. These include the activation of a complex network in which numerous cell types and soluble factors of the immune system participate. Our hypothesis is that the host's own immune system is inadvertently responsible for the cause of pathological states through its over-vigorous attempts to destroy the virus, resulting in damage to the host itself.

The research interests of the Infection and Immunity Group are in the broad area of virus-host interactions and we are pursuing this goal using a range of viral and animal models. An integral component of our research program involves basic studies that attempt to dissect the roles of leukocyte subsets, cytokines, chemokines, antibody and a number of signaling molecules in viral infection and disease. The effector mechanisms that are generated to control and clear virus instead often cause immunopathology that has serious, sometimes lethal, consequences for the host. As a consequence we have directed our research effort toward dissecting out the immunological parameters that allow the rapid resolution of virus infection with minimum pathology. These studies are being carried out in parallel with others that attempt to reveal the many strategies that viruses have evolved to subvert the host immune response. We believe that understanding virus-host interactions is the most promising route to the development of effective vaccines and of selective treatments that would minimize the damaging effects of an established infection.

The Group moved from the University of Sydney to the JCSMR at the end of 2001. There was an anticipated and expected transition phase through which the laboratories were set up and personnel recruited.

In the last year, we have made substantial progress in 5 key areas of our research. First, we now have a better understanding of whether the cytolytic potential or the ability to produce cytokines by CD8+ lymphocytes (a key population of white blood cells necessary for virus control) is important for virus clearance. Second, we have successfully established an animal model for studying the consequences of 'reverse signaling' via membrane bound tumor necrosis factor, a key proinflammatory cytokine and one that is involved in leukocyte recruitment. We have found that this is a critical cytokine for recovery from some viral infections. Third, we have some useful insights into how antibody that is produced during a primary viral infection controls virus proliferation and spread. Fourth, we have evidence that granulocytes are critical for helping to shape the protective immune response to viral infection. Finally, we believe we have some pertinent clues as to why the gas, nitric oxide, an important molecule involved in normal physiology, can also be a critical mediator of influenza pneumonia.



Diabetes/Transplantation Immunobiology Laboratory

Leader: Dr Charmaine Simeonovic

Studies in the laboratory have focused on the immunobiology of pancreatic islet xenotransplantation and allotransplantation in mice.

Immunomodulatory effects of QFA (Coxiella burnetii, Phase 1) treatment of mice

We have been examining the capacity for non-specific antigen stimulation of the host immune system with QFA (formalin-killed, complement fixing antigen of Coxiella burnetii) to induce a regulatory immune response which protects against islet allograft rejection. Previous studies by others have shown that QFA treatment of pre-diabetic, adult NOD mice prevents the induction of clinical diabetes i.e. QFA therapy appears to regulate the destructive autoimmune response.

In an islet allograft model, we have shown that QFA treatment modulates the cellular immune response to allografts of adult BALB/c islets in C57BL/6J (B6) mice; recipient animals pretreated with QFA (150ml) i.p. at 7 days prior to transplant showed prolonged survival of islet tissue, often in the presence of a mild cellular infiltrate. In contrast, control grafts from PBS-treated mice showed an intense inflammatory response and only damaged islet tissue present at the graft site. Similar prolongation in allograft survival was achieved in iNOS-/- mice but not in IFN-g-/- mice or TNF-/- mice, indicating that the protective mechanism is IFN-g-dependent, TNF-dependent but not iNOS-dependent nor NO-dependent. To further examine the mechanism of IFN-g-dependent protection, quantitative RT-PCR analysis of cytokine and iNOS gene expression in allografts from QFA-treated and PBS-treated iNOS-/-, iNOS+/+, IFN-g-/- and B6 mice showed that islet allograft protection in QFA-treated mice correlated with enhanced intragraft expression of TNF and strong expression of IFNg_transcripts; protection also correlated with lack of IL-4 gene expression. Prolonged islet allograft survival following QFA treatment therefore correlates with IFNg gene expression, enhanced TNF mRNA levels and inhibition of IL-4 gene transcription. RT-PCR analyses of cytokine transcripts in liver mononuclear cells (MNCs) from QFA-treated and control B6 mice suggested that there was enhanced expression of IFN-g and TNF transcripts in QFA-treated liver MNCs. Together these studies suggested that allograft protection may be mediated by one or more subpopulations of liver MNCs. Four-colour flow cytometry staining (NK1.1, abTCR, CD4/CD8 and to _- galactosyl- ceramide-loaded CD1 (a- GalCer- CD1) tetramer) indicated that QFA treatment did not lead to amplification of NKT cells in liver or spleen. In addition, B6.CD1-/- mice (which lack functional NKT cells) pre-treated with QFA (150ml, i.p.) but not PBS (controls) remained intact at 1 week post-transplant, confirming that NKT cells do not contribute to QFA-mediated islet allograft protection. Flow cytometry studies of liver MNCs from B6 mice at 2 weeks post-QFA treatment showed that CD11b+F4/80+ macrophages increased 241-fold and TCRab+ NK1.1- T cells increased 69-fold compared to liver MNCs from control PBS-treated B6 mice. It is therefore possible that liver CD11b+F4/80+ macrophages and/or liver TCR + NK1.1- T cells are responsible for QFA-mediated allograft protection; these sub-populations may also play a role in QFA-induced protection from clinical diabetes in NOD mice. Adoptive transfer studies in the islet allograft and autoimmune diabetes models are now warranted.

Charmaine J. Simeonovic, Sarah K. Popp, Jodie Zarb and Alan Baxter


Evaluation of Fowlpox viral vector for gene delivery to pancreatic islet
transplants

The feasibility of using avipox virus as a vector for gene delivery into fetal pig proislets, fetal mouse proislets and adult mouse islets was examined using a recombinant fowlpox virus engineered to express the lacZ gene (FPV-LacZ). The efficiency of in vitro transduction was tissue-specific and species-specific: the optimal infective dose of FPV-LacZ for pig proislets, mouse proislets, adult mouse islets and NIT-1 cells (pancreatic beta cell line) was 1 x 105pfu / 100ml (mouse proislets only) -1 x 108pfu/ 100ml. Following transplantation to immuno-incompetent nude mice, reporter gene expression in the FPV-treated islet tissue was transient (3-7 days). In contrast, FPV-LacZ- infected NIT-1 cells maintained lacZ gene expression beyond 18 days. Silencing of transgene expression which occurred in vivo but not in vitro, therefore did not require a T cell immune response. Treatment of transplanted nude mice with anti-IFN-g mAb failed to prolong transgene expression. Following transplantation to immunocompetent mouse strains, immunological destruction of isografts of FPV-LacZ-infected adult mouse islets suggested that either an immune response to FPV proteins or to the reporter gene product, b-galactosidase had been generated. Co-delivery of the immunoregulatory cytokine gene bioactive rat TGFb to adult mouse islets by in vitro infection with FPV-TGFb failed to prevent immunological injury, despite intragraft expression of TGFb mRNA for up to 3 days post-transplant. The Fowlpox viral vector is therefore a suitable mechanism for gene delivery to pancreatic isle tissue in vitro but not in vivo, due to an unidentified pathway of transgene silencing.

Michelle Solomon, Ian Ramshaw, Jodie Zarb, Celina-Anne Lynch, Karla Harris and Charmaine Simeonovic



Cancer and Human Immunology Group

Leader: Dr Hilary Warren

Human Natural Killer Cells

Natural Killer (NK) cells are cells of the innate immune response that attack virally infected cells or cells that have undergone malignant transformation. To regulate these activities, NK cells express both activating and inhibitory receptors. The inhibitory receptors bind MHC class I molecules, such that alterations in cells that lower the level of MHC class I at the cell surface result in permissive NK cell activity. The identity of various activating receptors is known, but the ligands they interact with remain largely unknown.

During 2002, studies have been completed on the expression and function of MHC class I receptors in patients with NK lymphocytosis, and on the expression and function of the KIR2DL4 receptor in donors expressing different alleles of this receptor. Both these projects are a collaborative study with immunogeneticists at Royal Perth Hospital.

NK lymphocytosis patients have on average 17-fold higher numbers of NK cells in their peripheral blood compared to normal donors. We showed that the CD94/NKG2A inhibitory receptor is expressed by all NK cells in these patients, compared to 50% in normal donors, and that patients' NK cells have a higher level of expression of this receptor. Other inhibitory receptors such as the Killer Ig-like Receptors are rarely expressed on patients' NK cells. CD94/NKG2A inhibits NK cell activity by binding to the non classical class I molecule HLA-E. Interestingly, HLA-E is only cell surface expressed when it binds in its peptide groove the signal sequence peptide from a range of classical class I molecules. Thus CD94/NKG2A can monitor the level of expression of many class I molecules to assess whether a cell is normal or abnormal. We showed that in NK lymphocytosis patients CD94/NKG2A is functional. Normal functioning of this receptor may account for the fact that many patients are asymptomatic, such that the enlarged NK cell pool remains functionally silent.

The KIR2DL4 receptor is expressed (at the mRNA level) by all NK cells, yet its cell surface expression and function remain controversial. KIR2DL4 probably recognises HLA-G, a non classical class I molecule expressed on placental trophoblasts, implicating a role for this receptor in pregnancy. Interestingly, there are several alleles of the KIR2DL4 gene. Of the two most common alleles, one results in a truncated form of the receptor lacking a cytoplasmic domain. Twenty five percent of the population are homozygous for this defective KIR2DL4 allele. We have established that the presence of at least one allele encoding the full length receptor is required for expression and function of KIR2DL4, and that there is no expression and function of KIR2DL4 in individuals homozygous for the defective allele. Interestingly, even for individuals with the full length allele, KIR2DL4 is expressed only on the minor NK cell subset characterised by high expression of CD56 and which is a potent producer of IFN . The major NK cell subset, characterised by low expression of CD56, does not express KIR2DL4, but expression is induced following culture. KIR2DL4 functions as an activating receptor in experimental conditions, yet has the capacity to function also as an inhibitory receptor. Our studies have clarified conflicting results in the literature on the expression and function of KIR2DL4.